PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0144.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79142.3 Da    PI: 5.8251
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0144.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1966122157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  Cagra.1671s0144.2.p  66 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 122
                          688999************************************************995 PP
2START223.56.7e-702534662206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          la +a++el+++a++++p+W++++  ++ +e+ ++f+++ +     +++ea+r+++vv+m++++ ve+l+d++ qW++ +a    +a+tl
  Cagra.1671s0144.2.p 253 LAVAAMEELMRMAQVDDPMWKSLV--LDDEEYARTFPRGIGprpagFRSEASRETAVVIMNHVNIVEILMDVN-QWSTIFAgmvsRAMTL 339
                          6789********************..************999********************************.**************** PP

                          EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
                START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                          +v+s+g      galq+m+ae+q++splvp R+ +f+Ry++q+g+g+w++vd+S+ds q++p     +R++++ Sg+li++++ng+skvt
  Cagra.1671s0144.2.p 340 AVLSTGvagnfnGALQVMTAEFQVPSPLVPtRETYFARYCKQQGDGSWAVVDISLDSLQPNPP----ARCRRRASGCLIQEMPNGYSKVT 425
                          **************************************************************8....*********************** PP

                          EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          wvehv++++r +h+l++++v++g+a+gak+wva l+rqce+
  Cagra.1671s0144.2.p 426 WVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCER 466
                          ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2144121IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1954123IPR009057Homeodomain-like
PROSITE profilePS5007116.47163123IPR001356Homeobox domain
SMARTSM003891.6E-1864127IPR001356Homeobox domain
PfamPF000463.2E-1766121IPR001356Homeobox domain
CDDcd000867.92E-1966124No hitNo description
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
SuperFamilySSF559616.68E-34243468No hitNo description
PROSITE profilePS5084842.001243469IPR002913START domain
CDDcd088758.19E-123247465No hitNo description
SMARTSM002349.1E-61252466IPR002913START domain
PfamPF018523.5E-62253466IPR002913START domain
Gene3DG3DSA:3.30.530.203.2E-5342432IPR023393START-like domain
SuperFamilySSF559615.13E-27485711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MFEPNMLLAA MNNADSNNHN YNHHEDNNNE GFLRDDEFDS ANTKSGSENQ EGGSGNDQDP  60
LHPNKKKRYH RHTQLQIQEM EAFFKECPHP DDKQRKQLSR ELGLEPLQVK FWFQNKRTQM  120
KNHHERHENS HLRAENEKLR SDNLRYREAL ANASCPNCGG PTAIGEMSFD EHQLRLENAR  180
LREEIDRISA IAAKYVGKPV SNYPLMSPPP LPPRPLELAM GNIGGEAYGN NPTDLLKSIT  240
TPTEADKPVI IDLAVAAMEE LMRMAQVDDP MWKSLVLDDE EYARTFPRGI GPRPAGFRSE  300
ASRETAVVIM NHVNIVEILM DVNQWSTIFA GMVSRAMTLA VLSTGVAGNF NGALQVMTAE  360
FQVPSPLVPT RETYFARYCK QQGDGSWAVV DISLDSLQPN PPARCRRRAS GCLIQEMPNG  420
YSKVTWVEHV EVDDRGVHNL YKHMVSTGHA FGAKRWVAIL DRQCERLASV MATNVSSGEV  480
GVITNQEGRR SMLKLAERMV ISFCAGVSAS TAHTWTTLSG TGAEDVRVMT RKSVDDPGRP  540
PGIVLSAATS FWIPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL  600
LRVNSANSSQ SNMLILQESC TDPTASFVIY APVDIVAMNI VLNGGDPDYV ALLPSGFAIL  660
PDGNANGGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASMSCETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0144.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632762.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_023632763.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_023632764.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9DFH80.0B9DFH8_ARATH; AT1G05230 protein
STRINGCagra.1671s0144.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2