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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1671s0119.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
C3H |
Protein Properties |
Length: 410aa MW: 45112.6 Da PI: 7.7616 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1671s0119.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 33.7 | 6.2e-11 | 49 | 74 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+f++rtG C yG++C+++H+
Cagra.1671s0119.1.p 49 PGERDCQFYLRTGLCGYGSSCRYNHP 74
5789*********************9 PP
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2 | zf-CCCH | 36.5 | 8e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tG CkyG++Ck++H++
Cagra.1671s0119.1.p 94 QPDCEYFLKTGACKYGSTCKYHHPK 118
789********************96 PP
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3 | zf-CCCH | 37.2 | 4.8e-12 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
++C++++rtGtC++G CkF+H++
Cagra.1671s0119.1.p 140 KPCPYYLRTGTCRFGVACKFHHPQ 163
69********************97 PP
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4 | zf-CCCH | 39.9 | 6.8e-13 | 265 | 288 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++Crff+ tGtCkyGd Ck++H+
Cagra.1671s0119.1.p 265 QPECRFFMNTGTCKYGDDCKYNHP 288
799********************8 PP
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5 | zf-CCCH | 26.4 | 1.2e-08 | 309 | 333 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
++++ C +f+ +G+Ck+G++CkF H
Cagra.1671s0119.1.p 309 PGQPACGNFRSYGFCKFGPNCKFDH 333
57899******************** PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.361 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 54 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 96 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.469 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 140 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-10 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 262 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-7 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 268 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 304 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-7 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MRPMSSDETQ HLQSSLVSIP SSDNLQDAFT KLKVNDNGVA ESKPYPDRPG ERDCQFYLRT 60 GLCGYGSSCR YNHPTNLPQG VAYYKEELPE RIGQPDCEYF LKTGACKYGS TCKYHHPKDR 120 NGAEPVLFNV IGLPMRKGAK PCPYYLRTGT CRFGVACKFH HPQLDNGHST AYEMPSFPST 180 GLQYASGLTM MSTYGTLPRQ QVPQSYVPIM IPPSQGLLPP QGWGTYMAAS NPMYNVKNQP 240 YYSGSSASVP VAVQLNPGSP ESSDQPECRF FMNTGTCKYG DDCKYNHPGV RMSPPLPSLI 300 NPFVLPARPG QPACGNFRSY GFCKFGPNCK FDHQMLPYPG LSMPSSLATP YASPVSTHER 360 ISSRSDSKSL SNGKPDVKKQ SSETDKPDYD SEQLDNSEVH DLSENSSST*
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Functional Description ? help
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Source |
Description |
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493434 | 0.0 | AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990. |