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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.1671s0052.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
ERF |
| Protein Properties |
Length: 131aa MW: 14534.8 Da PI: 6.8076 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1671s0052.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.5 | 4.6e-20 | 16 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +g+++AeIrd ++ g r++lg+f+tae+Aa+a+++a+ +++g
Cagra.1671s0052.1.p 16 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 66
89*******.**********65443..*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 131 aa
Download sequence Send
to blast |
MDQGGRSNGG GAEQVKFRGV RRRPWGKYAA EIRDSRKHGE RVWLGTFDTA EDAARAYDRA 60
AYSMRGQAAI LNFPHEYNMG AGSSTTAANT SSSSSQVFEF EYLDDSVLDE LLEYGENYNK 120
THNINNGKRQ *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT026421 | 1e-129 | BT026421.1 Arabidopsis thaliana At1g04370 mRNA, complete cds. |
| GenBank | CP002684 | 1e-129 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F19P19 | 1e-129 | AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G04370.1 | 1e-58 | Ethylene-responsive element binding factor 14 |
