PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 313aa    MW: 35303.7 Da    PI: 7.102
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_157.92.2e-18229289363
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                            +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+ee +ke +k  +ev
  Cagra.1671s0014.1.p 229 TAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEETTKERYKKLMEV 289
                          679***************************************************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.6E-14225282No hitNo description
SMARTSM003382.9E-15227291IPR004827Basic-leucine zipper domain
PfamPF001701.8E-17228289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.53229281IPR004827Basic-leucine zipper domain
CDDcd147074.01E-18231280No hitNo description
SuperFamilySSF579591.19E-10231283No hitNo description
PROSITE patternPS000360234249IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRVFGLHIKI TDITRDNPRK ISSIFISLVR SFPTKSSEMA SFKLMSSSNS DLSRRNSSSA  60
SSSPSIRSSN HLRPNLHADQ SRISFAYGGG SDYTFTSESK PLDMSIDLGD RNSVNNGKSV  120
DDVWKEIVSG EQRRIMMKEE AQEDVTMTLE DFLAKAAMDD DAANIDSDGI DVKIPPERLN  180
NDGSYTFDFP MMSQPQRHSS FQMIEGPMGG GGMRGKRGRV MMEAMDKATA QRQKRMIKNR  240
ESAARSRERK QAYQVELETL AAKLEEENEQ LLKEIEETTK ERYKKLMEVL IPVDENPRPS  300
SRSLSRSHSL EW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475032.11e-151PREDICTED: G-box-binding factor 4-like
SwissprotP427771e-148GBF4_ARATH; G-box-binding factor 4
TrEMBLR0IKE71e-147R0IKE7_9BRAS; Uncharacterized protein
STRINGCagra.1671s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-99G-box binding factor 4