 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1670s0031.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 412aa MW: 47216.9 Da PI: 6.6777 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1670s0031.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 180.2 | 5.2e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87
+ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg
Cagra.1670s0031.1.p 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATG 95
69****************************.99**************954555554445******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+dk+++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle
Cagra.1670s0031.1.p 96 RDKAIYI-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
*******.8899****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MNSFSQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN 60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLIGMR KTLVFYKGRA 120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKKLAA TERKMGGYDS SPSHWYDDQL 180
SFMASEFDSS SSQQFLPSHH YNRHHPHQHT LPCGLNVSSA YAYNNNNNNP NLQCKQELEL 240
HYNHMIQHQQ QNHHLRESMF LQLPQLESPN SNGNSLPYGS SNTSKNTRNI GNLQQSSNLS 300
HEENLQQGNH SFSSLYYDQG VEQVTTDWRV LDKFVASQLS NEEAAAAASA SASSHQNNVK 360
NDTSNTAYDQ VIGEGINLPE NDSERVVEMG EEYKNSHAAS TSSSCQIDLW K*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007190 | 1e-148 | AC007190.4 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence. |
| GenBank | CP002684 | 1e-148 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
