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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1655s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 647aa MW: 73722 Da PI: 8.7071 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.6e-08 | 590 | 633 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+t + lv+a k ++++ +W+++a+ ++ g+t qck ++ Cagra.1655s0025.1.p 590 WSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMIQCKKKFA 633 ********************************.********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 7.8E-21 | 95 | 192 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 5.63E-21 | 95 | 177 | IPR001623 | DnaJ domain |
SMART | SM00271 | 2.3E-17 | 98 | 173 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 2.0E-17 | 99 | 178 | IPR001623 | DnaJ domain |
CDD | cd06257 | 2.36E-13 | 99 | 170 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.349 | 99 | 181 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-8 | 104 | 122 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-8 | 122 | 137 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-8 | 153 | 173 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 158 | 177 | IPR018253 | DnaJ domain, conserved site |
PROSITE profile | PS50090 | 6.156 | 458 | 513 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.14E-7 | 460 | 506 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 462 | 505 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-6 | 462 | 515 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-6 | 463 | 505 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.58E-4 | 465 | 505 | No hit | No description |
SMART | SM00717 | 2.3E-7 | 586 | 638 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-8 | 589 | 642 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-6 | 590 | 634 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 590 | 634 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.841 | 590 | 636 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.37E-5 | 590 | 636 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MPSRRSDSAI KLIAYSEELV DGKPFYAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP 60 ADNEDSDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK 120 SYREAALKHH PDKLATLLLA EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST 180 DEFDDEVPSD CLPQDFFKVF GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYGFK 240 SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK 300 RKEEEKAEKQ QKKEAKLLAK KKQAEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKNKEKEK 360 KLLRKERNRL RTLSAPLVAQ HLLDISEEDI ENLCMSLNTE QLQNLCDKMG NKEGLELAKV 420 IKDGCESSRN DEAETKEKES KKTNGGPEPK TRVSQLDSST QKKQPWSKEE IDMLRKGMIK 480 YPKGTSRRWE VVSEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASISSPL 540 STREELGESL PTMTTTKASP SKETVVGKSS SSQVSDTNGE AGGSSDADGW STVQERALVQ 600 ALKTFPKETS QRWERVAAAV PGKTMIQCKK KFAELKEIIR NKKTGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 2e-14 | 195 | 298 | 20 | 123 | Zuotin |
5dje_B | 2e-14 | 195 | 298 | 20 | 123 | Zuotin |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 337 | KKKQAEDAAIAAEEEKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1655s0025.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC008153 | 0.0 | AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297179.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_023641194.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | R0G3N0 | 0.0 | R0G3N0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1655s0025.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2361 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06110.2 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1655s0025.1.p |