 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1655s0012.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
B3 |
| Protein Properties |
Length: 271aa MW: 30278.3 Da PI: 7.3553 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1655s0012.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 100.6 | 9.3e-32 | 36 | 149 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
f+k ltpsdv+k++rlv+pk++ae++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+
Cagra.1655s0012.1.p 36 FEKSLTPSDVGKLNRLVIPKQHAEKYfplsnnnggggggddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLD 125
99***************************9999999988775556699****************************************** PP
TT-EEEEEE-SS.SEE..EEEEE-S CS
B3 76 egDfvvFkldgr.sefelvvkvfrk 99
+gD+v F+++ r + ++l+++++r+
Cagra.1655s0012.1.p 126 AGDVVFFQRH-RfDLQRLFIGWRRR 149
********65.44888899999997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MSVNHYHHHN TLSLQQHQQH IHHQNDLSLA QRESLFEKSL TPSDVGKLNR LVIPKQHAEK 60
YFPLSNNNGG GGGGDDVATT EKGMLLSFED ESGKCWKFRY SYWNSSQSYV LTKGWSRYVK 120
DKHLDAGDVV FFQRHRFDLQ RLFIGWRRRG EASSSPGAVS QEALAANTTA FWTPYRQVHA 180
STTYPNIHHE YSHYGAAADQ AQSTPTVVAG SSRTVRLFGV NLECHGDAVE PPPRTDGGYS 240
GQHIYYYSTP HPMDISFAGE ALEQVGDGRG *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 1e-49 | 29 | 149 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 1e-49 | 29 | 149 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ441076 | 0.0 | AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene). |
| GenBank | AK175281 | 0.0 | AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13. |
