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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1642s0072.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 252aa MW: 28299.1 Da PI: 9.6256 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.7 | 8e-16 | 181 | 225 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ +l+ Cagra.1642s0072.1.p 181 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLR-RLK 225 79************************************9998.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-13 | 174 | 223 | No hit | No description |
SMART | SM00338 | 2.4E-12 | 177 | 249 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.197 | 179 | 223 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.81E-22 | 181 | 226 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-10 | 181 | 223 | No hit | No description |
Pfam | PF00170 | 6.6E-13 | 181 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 184 | 199 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGSIRGNIEE PISQSLTRQN SLYSLKLHEV QTHLGSSGKP LGSMNLDELL KTVLSPAEEG 60 LVRQGSLTLP RDLSKKTVDE VWRDIQQDKN GTTTTHKQPT LGEITLEDLL LKAGVVTETI 120 VPQENVVNIA SHGQWVEYHQ PGQQQGFMSY PVCEMGGLSD TPQAPGRKRV AGEIVEKTVE 180 RRQKRMIKNR ESAARSRARK QAYTHELEIK VSRLEEENEK LRRLKEAERI LPSEPPPDPK 240 WKLRRTNSAS L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1642s0072.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004261 | 1e-159 | AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence. | |||
GenBank | AF334209 | 1e-159 | AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds. | |||
GenBank | AY084668 | 1e-159 | AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence. | |||
GenBank | BT025175 | 1e-159 | BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-159 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294842.1 | 1e-180 | ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
Swissprot | Q9C5Q2 | 1e-169 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | R0HR06 | 1e-179 | R0HR06_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1642s0072.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 1e-156 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1642s0072.1.p |
Publications ? help Back to Top | |||
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