PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1629s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 356aa    MW: 38914.6 Da    PI: 8.8995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1629s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C  C+k Fs++  L  H++tH
  Cagra.1629s0016.1.p 73 YLCDLCDKGFSSQKALAGHQNTH 95
                         56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.26E-67099No hitNo description
PfamPF139127.4E-77297IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-47395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.71873100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MENQSPVSSS NSSSPPKDDR KRKTVAVAEE KKKETMNLPR QKPPRVIVSE RTVLERPSLV  60
LEVVPPERDN MVYLCDLCDK GFSSQKALAG HQNTHREARE IMEMHKKQLN QPFHLDTCRM  120
PFDSYGGMSF GPFRYGGGSS SRPYLFSTDG NVLKKMKTTT MLPPPTQNHP LTESTGHNSS  180
PRIALNHATN NVPAGDDEIN LELTLAPPNS KGASSGRANN NTNPSLNGEA ARGTPNLITP  240
VSSHVSRFNY AAGNPMSPFT GGYVPLFGNT NPCHGMGSSG PNNNLFSMGM NNNAMVPPPY  300
ATYYPPTNNL CHDLFSLQGN GAGSKEENKV MAPEDDENKD IEIRWLTKKK RSGRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1629s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279514.10.0uncharacterized protein LOC17875883
TrEMBLR0ETM10.0R0ETM1_9BRAS; Uncharacterized protein
STRINGCagra.1629s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-08C2H2 family protein