PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1613s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 327aa    MW: 38064.6 Da    PI: 7.7299
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1613s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-081255239
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         ++r C+++++k++ ++C +++ +lC  C ++ H+       H++
  Cagra.1613s0011.1.p 12 QPRACDLCPDKHAVWYCASDDAFLCYVCDESVHSAnhvatkHKR 55
                         7899*****************************66866666766 PP
2CCT65.31.8e-22278321144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++ RY+ K+k+R+FeKkirYe+RK++A++RpR+KGrFv+++
  Cagra.1613s0011.1.p 278 REARVWRYRVKKKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
                          9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2241158IPR000315B-box-type zinc finger
PfamPF006436.0E-71255IPR000315B-box-type zinc finger
CDDcd000211.66E-101458No hitNo description
PfamPF062037.3E-17278320IPR010402CCT domain
PROSITE profilePS5101715.477278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMPKYQEDVK KQPRACDLCP DKHAVWYCAS DDAFLCYVCD ESVHSANHVA TKHKRVCLRT  60
PSDVLGGTTS NPVWHSGFRR KARTPRSRSE KKTQEKKEDE RRREDPRVPE IGGEAMFFIP  120
EPNDDEDDMT SLVPEFEGFT EMGFFLTNHN GTQETTKQFN FEDEIDAMED LYYIEEAATK  180
TNGAEACPGQ SLMSCKKDYD NAITISAKTE VIEDYESNTR QRNMLLRLNY ENVIAAWDKQ  240
ESPREATRNQ NEFNNTSNFQ LVPPGIIEEK RVTSRSEREA RVWRYRVKKK NRLFEKKIRY  300
EVRKVNADKR PRMKGRFVRR SLATES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1613s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632548.10.0zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B30.0COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLR0I7D90.0R0I7D9_9BRAS; Uncharacterized protein
STRINGCagra.1613s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-169B-box type zinc finger protein with CCT domain