![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.1613s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 38826.5 Da PI: 4.7341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 92 | 133 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 sg+kGVr+++ +g+++AeIrdp e +kr +lg+f t+eeAa+a+ Cagra.1613s0010.1.p 92 SGFKGVRRRP-WGKYAAEIRDPFE---KKRKWLGTFPTEEEAAEAY 133 79********.**********644...5*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.86E-21 | 92 | 133 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-15 | 92 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-9 | 92 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-15 | 93 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 93 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 94 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-19 | 94 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MIRSREEVDD IVDLNVIRTV NVICNDPYAT DSSSDDDDEV VISGKNTRRR QIKPKPRKRF 60 VSRICVPTLI KRYENLSSST GNKAAGNRKT SSGFKGVRRR PWGKYAAEIR DPFEKKRKWL 120 GTFPTEEEAA EAYQKSKSVF DERMGLVKAE VDVVDLTKPC GVRKPEECSV RKPVKSTKSS 180 VPSRSAKGKK VHKKNVVDKT FVCGGYVDED EGLSIDKLLE DPLMTPSISD IFRDSAVGSD 240 DIWVDCNPAE FNSIFDDFKL DSLEVDDKIG NEKTLGFKIG DTPAEIASTI ANIFDDADLR 300 EFEQLADEFR LGDSPTDDFW VLGEPDVGDD YNWLNSTIDW LDKSL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 97 | 117 | RRRPWGKYAAEIRDPFEKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.1613s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254578 | 0.0 | AC254578.1 Capsella rubella clone JGIBSIA-13A21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632864.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Swissprot | Q9M9B2 | 1e-128 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | R0GU04 | 0.0 | R0GU04_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1613s0010.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49120.1 | 1e-119 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.1613s0010.1.p |