PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NF-YA

Protein Properties

Length: 194aa MW: 21676.1 Da PI: 8.9099

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1508s0155.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.3	1.3e-33	102	158	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++k+ +ksrkpylheSRh hA+rRpRg+gGrF Cagra.1508s0155.1.p 102 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-IKSRKPYLHESRHLHAIRRPRGCGGRF 158 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.9E-38	100	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.169	101	161	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.3E-28	103	158	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-24	104	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	106	126	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.2E-24	135	158	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MTSIHQLSEN IESHEKQEQR DSHFQPPTPP GRHYESIATS LVYSEPVPHP GSTHSMAPGQ 60 YPYPDPYYRS IFAPPPQPYA GVHIQLMGMQ QQGVPLPSDA VEEPVFVNAK QYHGILRRRQ 120 SRAKLESQNK VIKSRKPYLH ESRHLHAIRR PRGCGGRFLN VKKDDEHHED SHEDNSNLSS 180 GKSAMAASSG GTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-22	101	170	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1508s0155.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305656.1	1e-140	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	1e-118	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	R0I898	1e-139	R0I898_9BRAS; Uncharacterized protein
STRING	Cagra.1508s0155.1.p	1e-140	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-103	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Cagra.1508s0155.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]