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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1508s0136.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27784.5 Da PI: 5.6801 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 124 | 167 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq Cagra.1508s0136.1.p 124 VAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 167 677*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.23E-7 | 115 | 171 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-11 | 116 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.43 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 120 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-5 | 125 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNQSLDLDEA LSPSLFEFSH LYEPFLPPQD IFLPSPKTEV FNESHDLDAF FPTRKHQKLI 60 NSSFHFNSDE PFFPSSNPNL LDSYITETSN FSEFLVPDFS PAFKVGWTDS KDDTKKPEVS 120 AQSVAARKRR RRITEKTQEL GKLIPGSQKH NTAEMFHAAA KYVKFLQAQI EILQLKQTKM 180 QTWESSEVER EMQFLLASQE IQEKLSTEEV CVVPKEMVQV LKAEGCILRN PRISRDLNKL 240 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 130 | RKRRR |
2 | 127 | 132 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1508s0136.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305895.2 | 1e-172 | transcription factor bHLH52 | ||||
Swissprot | Q9SA82 | 1e-121 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | R0INR8 | 1e-170 | R0INR8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1508s0136.1.p | 1e-177 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-123 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1508s0136.1.p |
Publications ? help Back to Top | |||
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