PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1508s0093.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 365aa MW: 39530.2 Da PI: 8.9907 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 36 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s ++ H H Cagra.1508s0093.1.p 36 FKCHVCHKKLSTASGMVIHVLQvH 59 89*****************87656 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 12.716 | 7 | 66 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 5.95E-5 | 12 | 61 | No hit | No description |
SMART | SM00355 | 20 | 12 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 14 | 35 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 36 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK 60 ENVTKVPNAK TGRDSTDIEI YGMQGIPPDV LAAHYGEEEE EPPAKVAKVE IPSAPLGGVV 120 PRPYGMVYPP QQMPGVVRPM YYPGPPMRPP GHVWPMPPPR PQQWYPQNPA VSVPPPAHLG 180 YRPQPLFPVQ NMGMTLPTSA PVVQPSPVTG VAPPGITSSS PAMPVPQPLF PVVNNSIPSQ 240 ASPFSTPLPV GGAQQPSHAD ALGSVNAYPP NNSIPGGANS HSYASGPNTS GPSIGPPPVI 300 ANKAPSNQPN EVYLVWDDEA MSMEERRMSL PKYKVHDETS QMNSINAAID RRISESRLAG 360 RMAF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1508s0093.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085612 | 0.0 | AY085612.1 Arabidopsis thaliana clone 16162 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305544.2 | 0.0 | protein SUPPRESSOR OF FRI 4 isoform X2 | ||||
Swissprot | Q9C5G0 | 0.0 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | D7KGH7 | 0.0 | D7KGH7_ARALL; Uncharacterized protein | ||||
STRING | Cagra.1508s0093.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1508s0093.1.p |
Publications ? help Back to Top | |||
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