PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1475s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 310aa    MW: 35489.8 Da    PI: 9.163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1475s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-1564109147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W   Ed +l ++v+ +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
  Cagra.1475s0003.1.p  64 RGHWRISEDTQLMELVAVYGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 109
                          789999**************************.***********996 PP
2Myb_DNA-binding51.62.2e-16117160247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
  Cagra.1475s0003.1.p 117 RAFTVEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 160
                          689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77859110IPR017930Myb domain
SMARTSM007172.8E-1163112IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-2764157IPR009057Homeodomain-like
PfamPF002495.3E-1564109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2465117IPR009057Homeodomain-like
CDDcd001671.52E-1067108No hitNo description
PROSITE profilePS5129425.612111165IPR017930Myb domain
SMARTSM007171.2E-13115163IPR001005SANT/Myb domain
PfamPF002499.6E-13117160IPR001005SANT/Myb domain
CDDcd001677.87E-10118161No hitNo description
Gene3DG3DSA:1.10.10.603.2E-20118165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDFSCFQEYP FGLQCRGTFN GFGENNAVSE TVEEFCNKGR MQKKKSDDDL KKKKKQSGSR  60
VCSRGHWRIS EDTQLMELVA VYGPQNWNHI AENMQGRTGK SCRLRWFNQL DPRINKRAFT  120
VEEEERLLAA HRAFGNKWAM IAKLFNGRTD NALKNHWHVL MARKMRQQSS SYVQRFNGSN  180
HNKPNTDHKI FNLSPGNEDD EDMNLRKYSW EMLKEGTTNL KAQYLQEEYC SSRMPRQGPH  240
QHYSTFPADS LALTLHVSIQ EPSSSSSSSS LSLPSSSTAE HTMVTRYIET TKPPAFIDFL  300
GVGHLSSNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-30641654105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-30641654105C-Myb DNA-Binding Domain
1msf_C2e-30641654105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1475s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292843.10.0transcription factor MYB117
TrEMBLR0FTE60.0R0FTE6_9BRAS; Uncharacterized protein
STRINGCagra.1475s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-180myb domain protein 110