PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 191aa MW: 20673.3 Da PI: 9.8295

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1472s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5.2e-19	17	66	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++ a+++++g Cagra.1472s0014.1.p 17 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDSAAREFRG 66 59*****.******654...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.3E-35	17	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.21E-22	17	75	IPR016177	DNA-binding domain
CDD	cd00018	9.77E-31	17	74	No hit	No description
Pfam	PF00847	9.5E-13	17	66	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.026	17	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-32	17	74	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MTKPDPTRES NAAKEIRYRG VRKRPWGRYA AEIRDPVKKT RVWLGTFDTA QQAARAYDSA 60 AREFRGSKAK TNFPTFLELH GDVKQEGAFV ASPCQSSTVV NSSSPKTARF VTPPQLELSL 120 GCGGAYRRIP VARPVYYFNV TTTTAAFPKV AVACGIQSDS ETSSVVDFEG GAGKITQPLD 180 LDLNLAPPAE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-21	12	74	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00202	DAP	Transfer from AT1G53170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1472s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB036884	2e-40	AB036884.1 Arabidopsis thaliana AtERF8 mRNA for ERF transcription factor8, complete cds.
GenBank	AC008007	2e-40	AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBank	AC022520	2e-40	AC022520.2 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence.
GenBank	AK117541	2e-40	AK117541.1 Arabidopsis thaliana At1g53170 mRNA for putative ethylene responsive element binding factor 8 (ERF8), complete cds, clone: RAFL17-19-H19.
GenBank	BT005401	2e-40	BT005401.1 Arabidopsis thaliana clone U50346 putative ethylene responsive element binding factor 8 (At1g53170) mRNA, complete cds.
GenBank	CP002684	2e-40	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305665.1	1e-137	ethylene-responsive transcription factor 8
Swissprot	Q9MAI5	1e-74	ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBL	R0IN88	1e-136	R0IN88_9BRAS; Uncharacterized protein
STRING	Cagra.1472s0014.1.p	1e-138	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53170.1	2e-65	ethylene response factor 8

Link Out ? help Back to Top
Phytozome	Cagra.1472s0014.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Cao FY, et al. Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity. BMC Plant Biol., 2018. 18(1): p. 211 [PMID:30261844]