 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.14503s0008.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
ERF |
| Protein Properties |
Length: 217aa MW: 23392.8 Da PI: 6.5328 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.14503s0008.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 66 | 7.5e-21 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g
Cagra.14503s0008.1.p 76 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 125
7********.**********7.....337************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MSAMVSALTQ VVSGRSQTET DGAHSSSSSA GHRRGWLGID SAPILSSFAP LDSSLGPIEE 60
STSKAGPEEA RDKRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFDTAE AAARAYDEAA 120
LRFRGSKAKL NFPEDVRLLP PPPLLFPADT VAKKAEEDLI NYWSYSKLLQ SSGQESFFGQ 180
GQEESSNTLE HSPMEQPLPP SSSGPSSSDF SGPSSA*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ580378 | 0.0 | AJ580378.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, clone At5g5008-like. |
