PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1424s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 404aa    MW: 45030.1 Da    PI: 9.7566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1424s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1523106187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f++  ++ d+l+++r +lp +f++e+g+++  s  +tl  ++g +We  +  r+ + + + l++ Wk+F+ angLk+g++++++ + +
  Cagra.1424s0003.1.p  23 FVTLILTDDNLTKSRRYLPLSFTRENGLDE--SGIITLVGKDGARWEGSI--RREKTGiMCLQRSWKNFAIANGLKSGESFTLEAILE 106
                          67778899********************95..558***************..666666689**********************97753 PP
2B349.39e-16169263199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+l ++r +lp +f++e+g+++++   +tl  ++g + e  ++ r k g++ l++GWkeF+ +ngLk+g++++++ +  +++
  Cagra.1424s0003.1.p 169 FVTLTLTHDNLIKSRRYLPLSFTRENGLDEPG--IITLVGKDGTKLEASIR-REKTGMMCLGNGWKEFAISNGLKSGESFTLEAIL-ENG 254
                          677788999999*****************766..8***************4.66666799***********************776.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++++++f++
  Cagra.1424s0003.1.p 255 TPMLSLFST 263
                          999999986 PP
3B336.77.6e-123254021798
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +lp +f+++ g++k +  ++t+  ++  +   +l    k+g + l++GWk+F++ang+k+gD ++++ + ++++++ +k+ +
  Cagra.1424s0003.1.p 325 ILPSQFMKASGINKLG--KITIFGQDRMKCFAYL--LSKDGVVALGSGWKGFCEANGVKTGDLFTLECVYEQDTTPAFKFSS 402
                          69*****999999877..5666677777766666..788889*************************887788888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1516109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1619110IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-1422109No hitNo description
PfamPF023623.4E-1423106IPR003340B3 DNA binding domain
PROSITE profilePS5086313.76123118IPR003340B3 DNA binding domain
SMARTSM010193.6E-2223118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-14167253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16167261IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-15168262No hitNo description
PfamPF023623.2E-15169263IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112169264IPR003340B3 DNA binding domain
SMARTSM010194.0E-27169264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-11310391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-12312389IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-9315387No hitNo description
SMARTSM010192.2E-9315402IPR003340B3 DNA binding domain
PfamPF023621.8E-10325402IPR003340B3 DNA binding domain
PROSITE profilePS508638.247325403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MELKMKKKRM RFRVSTSPSQ NRFVTLILTD DNLTKSRRYL PLSFTRENGL DESGIITLVG  60
KDGARWEGSI RREKTGIMCL QRSWKNFAIA NGLKSGESFT LEAILENGTR LLRLSSTEAT  120
RDRMQKEECS KGSEKESIFS EHSSGKESSK AKNNRDVRRN SFPASLHPFV TLTLTHDNLI  180
KSRRYLPLSF TRENGLDEPG IITLVGKDGT KLEASIRREK TGMMCLGNGW KEFAISNGLK  240
SGESFTLEAI LENGTPMLSL FSTESTSDRS QQGECSKNSE KESISAEIIR GYKNSKDTST  300
REERRDLSSA IQNQSVTLTL TPEDILPSQF MKASGINKLG KITIFGQDRM KCFAYLLSKD  360
GVVALGSGWK GFCEANGVKT GDLFTLECVY EQDTTPAFKF SSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1424s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639413.10.0B3 domain-containing protein REM12-like
SwissprotP0CAP41e-124REM12_ARATH; B3 domain-containing protein REM12
TrEMBLD7LIB40.0D7LIB4_ARALL; Predicted protein
STRINGCagra.1424s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-126B3 family protein