PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1424s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 410aa    MW: 45562.5 Da    PI: 10.3764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1424s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.9e-1923117199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+l ++r  lp +f++e+g++  ++ ++tl  + g +W  +l  r  sgr+vl+kGW+eFvkangLk+g++++++ +  +++
  Cagra.1424s0002.1.p  23 FVTLTLTHDNLIKSRRGLPLPFTKENGLE--RPGMITLLGTAGMKWVANL-QREASGRMVLGKGWSEFVKANGLKTGESFTLEAIV-ENK 108
                          6777889999999**************99..5559***************.5888999*************************876.788 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++++++fr+
  Cagra.1424s0002.1.p 109 TPMLSLFRT 117
                          899999986 PP
2B356.16.9e-18169263199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++ +lk+ r +lp +f++++g++k++   +tl  ++g +We +l  r k++ + l+kGWk+F+ +ngLk gD+++++ +  +++
  Cagra.1424s0002.1.p 169 FVTLTLKHTSLKHFRQYLPLSFTRKIGLDKPG--IITLVGKDGTKWEANL-LREKREIMCLGKGWKKFALSNGLKRGDSFTLEAIL-ENG 254
                          66777889999******************776..8***************.566666699***********************776.788 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          +l++++f++
  Cagra.1424s0002.1.p 255 TLMLSLFST 263
                          899999886 PP
3B351.51.8e-16313404297
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          ++ ++++   + + l+lp +f+++ g++k +  ++t+  ++  +   +l    k+g + l++GWk+F++ang+k gD+++++++++++++
  Cagra.1424s0002.1.p 313 VTLTLTPEDVRDCKLILPSQFMKASGINKLG--KITILGQHKMKCFAYL--LSKDGVVALGSGWKGFCEANGVKIGDSFTLEYIDEQDTS 398
                          55666777778899********999999766..7999999999999999..999999***************************998888 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          lv+k+ 
  Cagra.1424s0002.1.p 399 LVLKFS 404
                          888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1717111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1921118IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-1822116No hitNo description
PfamPF023621.3E-1823117IPR003340B3 DNA binding domain
PROSITE profilePS5086315.36823118IPR003340B3 DNA binding domain
SMARTSM010193.3E-3023118IPR003340B3 DNA binding domain
CDDcd100175.00E-18167262No hitNo description
Gene3DG3DSA:2.40.330.107.9E-17168261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-18169260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.931169264IPR003340B3 DNA binding domain
PfamPF023622.3E-17169263IPR003340B3 DNA binding domain
SMARTSM010192.5E-27169264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17308403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-18309404IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-13311394No hitNo description
PROSITE profilePS5086311.152312406IPR003340B3 DNA binding domain
PfamPF023626.0E-16312404IPR003340B3 DNA binding domain
SMARTSM010191.4E-20312407IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MQLERKEKPM RCRNSTSPNK SRFVTLTLTH DNLIKSRRGL PLPFTKENGL ERPGMITLLG  60
TAGMKWVANL QREASGRMVL GKGWSEFVKA NGLKTGESFT LEAIVENKTP MLSLFRTRST  120
SDGSEQGGCS KDSEKELISS KPSSGEKMMK ANNIRDVRRD SFPAGMKRFV TLTLKHTSLK  180
HFRQYLPLSF TRKIGLDKPG IITLVGKDGT KWEANLLREK REIMCLGKGW KKFALSNGLK  240
RGDSFTLEAI LENGTLMLSL FSTQSTSDGS QQREFCKDSE KGSISAEPSR GDKNMNATNH  300
SEERRDAIQN RFVTLTLTPE DVRDCKLILP SQFMKASGIN KLGKITILGQ HKMKCFAYLL  360
SKDGVVALGS GWKGFCEANG VKIGDSFTLE YIDEQDTSLV LKFSSNFVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1424s0002.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639411.10.0B3 domain-containing protein REM12-like isoform X1
RefseqXP_023639412.10.0B3 domain-containing protein REM12-like isoform X2
SwissprotP0CAP41e-125REM12_ARATH; B3 domain-containing protein REM12
TrEMBLD7LIB40.0D7LIB4_ARALL; Predicted protein
STRINGCagra.1424s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-127B3 family protein