PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.14142s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 266aa    MW: 30203.9 Da    PI: 9.0261
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.14142s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.31.4e-3180134358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           k+rY+eC+kNhAas Ggh+vDGCgEfm+s geegta++l CaAC+CHR+FHR+e +
  Cagra.14142s0001.1.p  80 KARYRECQKNHAASSGGHVVDGCGEFMSS-GEEGTAESLLCAACDCHRSFHRKEID 134
                           689*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-3867143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.5E-2981133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-3082133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.82183132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.85E-17188262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-28192263IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-29201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEIREKKDEK MEMVRRNPSA LDHHRLPQYT YSQTADKEKP TTKRNGSDPD PDPDLGTNPI  60
LIAPAPRSYA RPQQTTSPGK ARYRECQKNH AASSGGHVVD GCGEFMSSGE EGTAESLLCA  120
ACDCHRSFHR KEIDGLFVVN FNSFGHSQRP LVNRHVSPIM MSFGGGGGNG GPAESSTEDL  180
NRFHQSFSGN GVDQFHQFQP KKRFRTKFNE EQKEKMMEFA EKIGWRMIKQ EEDEVNRFCR  240
EINVKRQVFK VWMHNNKQAA KKKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-192022591875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.14142s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064390.0AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299733.10.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW71e-170ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLR0GAP20.0R0GAP2_9BRAS; Uncharacterized protein
STRINGCagra.14142s0001.1.p0.0(Capsella grandiflora)
STRINGXP_006299733.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-167homeobox protein 24