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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1390s0021.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 273aa MW: 31409.7 Da PI: 5.2069 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1390s0021.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.7 | 1.8e-17 | 90 | 142 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LAk lg++ rq+ +WFqNrRa++k
Cagra.1390s0021.1.p 90 KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 142
4457889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 118.5 | 3.7e-38 | 88 | 176 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk +n++L + +++L +
Cagra.1390s0021.1.p 88 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKFDNDSLLAYNKKLLA 176
69********************************************************************************9999975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MYVFDPNADA DAGLSLEMAF PQHGFMFQQL HEDTSQDQLP SCPPHLFNGG GNYMMNRSMS 60
LMNVQEDHNQ TLDEENLSDD GAHTMLGEKK KRLQLEQVKA LEKSFELGNK LEPERKIQLA 120
KALGMQPRQI AIWFQNRRAR WKTRQLERDY DSLKKQFESL KFDNDSLLAY NKKLLAEREA 180
EASWSNNGST ENSSDINLEL PRETTTTHVN TIKDLFPSSI RSSAHRDDDQ NHEIVQEESL 240
CNMFNGIDET TSSAGYWAWS DPNHNHHHHQ FN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. |
| GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. |
| GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |
