PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1390s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 472aa    MW: 51322.4 Da    PI: 8.2466
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1390s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32208264259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK++kg e+prsYY+Ct+a+Cpvkkkvers+ d+++++i+Y+g+H+he
  Cagra.1390s0003.1.p 208 DDGYNWRKYGQKPIKGCEYPRSYYKCTHANCPVKKKVERSS-DGQITQIIYKGQHDHE 264
                          8****************************************.***************8 PP
2WRKY105.13.8e-33355413159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Cagra.1390s0003.1.p 355 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 413
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-29200266IPR003657WRKY domain
SuperFamilySSF1182901.7E-25205266IPR003657WRKY domain
SMARTSM007742.0E-35207265IPR003657WRKY domain
PROSITE profilePS5081124.306208266IPR003657WRKY domain
PfamPF031065.5E-25208263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36340415IPR003657WRKY domain
SuperFamilySSF1182904.32E-29347415IPR003657WRKY domain
PROSITE profilePS5081137.734350415IPR003657WRKY domain
SMARTSM007743.8E-38355414IPR003657WRKY domain
PfamPF031061.6E-25356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAVEDDVSSS IRTTTLVAPT RPTITVPQRP PAIETAAYFF GGGDGLSLSP GPLSFVSSFF  60
VDSFPDVLTP DNQRTTSSFS QLLAGAMSVS PGAGGGGRST AGMFPGGGPM FTVPSGFSPS  120
SLLTSPIFFP PHQQSTAQTS FVQPQPQTHQ PQRQDTFSHH MPTSTSTAIH GRQSFDVSQA  180
DQRARNHHNN PANNSRSYNV VNVDKPADDG YNWRKYGQKP IKGCEYPRSY YKCTHANCPV  240
KKKVERSSDG QITQIIYKGQ HDHERPQNRR GGGSRDSVEA GDHIHFVVGG AGHVMESSDD  300
SGYGKDHDDD NNDDDDGDED LPGSKIRKID GVSTTHRTVT EPKIIVQTRS EVDLLDDGYR  360
WRKYGQKVVK GNPHPRSYYK CTTANCTVRK HVERASTDAK AVITTYEGKH NHDVPAARNG  420
TAAAAAGTSD QHRMRSMSGN NMQQNMSFGS NNNNSGQSPV LLRLKEEKIT I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38208416878Probable WRKY transcription factor 4
2lex_A2e-38208416878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1390s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262540.0AF426254.1 Arabidopsis thaliana WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297602.10.0probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HY980.0R0HY98_9BRAS; Uncharacterized protein
STRINGCagra.1390s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-166WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]