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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.13768s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 366aa MW: 41258.8 Da PI: 5.4977 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.9 | 1.4e-37 | 36 | 136 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r Pv+G++gv ++lq + Cagra.13768s0012.1.p 36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILERLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWL 124 7**************************************************************************************** PP DUF260 90 lkaelallkeel 101 +++el++++++l Cagra.13768s0012.1.p 125 AEEELKAVNSQL 136 ******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.973 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-34 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSHVKHIHKG SLERFLDLLL IALFVLMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE 60 QPKLFQNVHR LFGVRSIVKI LERLDETQKP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY 120 MIWLAEEELK AVNSQLQLYR SQQQQHNGPT QTPHDHHNQM IHDLGLDNKH QEDVTSQLDL 180 GMGLNLNNNQ SNVVAPFFSP LPVSETQQPQ MSYTYSCSEV NNNVYSPPAY NTDSGKEILT 240 NNNNAWGVQN RYDMYNDNNG GGGFSNQNEN VHEMKSNNGV VGIQSQLVNL QMASNHRQQE 300 EEEDAHEYDE IHQFLQIIDD RQSFADSKEA YASSSGETLK EHNIDEIGEN ELRSAATCFS 360 LTSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.13768s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292170.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 1e-166 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | R0HMD7 | 0.0 | R0HMD7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.13768s0012.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-144 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.13768s0012.1.p |
Publications ? help Back to Top | |||
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