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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1361s0016.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
BES1 |
| Protein Properties |
Length: 318aa MW: 33903.6 Da PI: 7.3426 |
| Description |
BES1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1361s0016.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF822 | 199.4 | 1.1e-61 | 2 | 123 | 1 | 121 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89
++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkg++++ e++e++g sa+as
Cagra.1361s0016.1.p 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVELDGTTYRKGCSRPvERMEIGGGSATAS 91
5899**********************************************************************999************* PP
DUF822 90 pesslqsslkssalaspvesysaspksssfps 121
p+ss+q s+ ss++ sp++s+ a ++s + +s
Cagra.1361s0016.1.p 92 PCSSYQPSPASSNFMSPASSSFANLTSGDGQS 123
******88888888888888776666554443 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60
WIVELDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP ASSNFMSPAS SSFANLTSGD 120
GQSLIPWLKH LSTTSSSSAS SSSRLPNYLY IPGGSISAPV TPPLSSPTAR TPRMNPDWQQ 180
LNNSFFVSST PPSPTRQIIP DSEWFSGIQL AQSVPASPTF SLVSQNPFGF KEEAASAAGG 240
GGGSRMWTPG QSGTCSPAIP PGADQTADVP MSEAVAPPEF AFGSNTNGLV KAWEGERIHE 300
ESGSDDLELT LGNSSTR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5zd4_A | 1e-22 | 6 | 75 | 372 | 441 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_B | 1e-22 | 6 | 75 | 372 | 441 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_C | 1e-22 | 6 | 75 | 372 | 441 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_D | 1e-22 | 6 | 75 | 372 | 441 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY050430 | 0.0 | AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. |
| GenBank | AY090331 | 0.0 | AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F9K20 | 0.0 | AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence. |
