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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.13424s0008.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HD-ZIP |
Protein Properties |
Length: 202aa MW: 23639.6 Da PI: 6.6851 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.13424s0008.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.5 | 9.7e-18 | 48 | 99 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++t+ ql+ Lee Fek++ + +++ LA+klgL+ +qV vWFqNrRa++k
Cagra.13424s0008.1.p 48 RKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYK 99
4789***********************************************9 PP
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2 | HD-ZIP_I/II | 114 | 9.1e-37 | 46 | 136 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
k r+l+ q++lLEesFe++++Lep+rK la++Lgl+p qvavWFqnrRAR+ktkqlE+d+++Lk+ y +lk++ + L +++++L+++
Cagra.13424s0008.1.p 46 KTRKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYKTKQLEHDCDSLKAIYAKLKTDWDILYSQNQTLKNK 134
889************************************************************************************99 PP
HD-ZIP_I/II 91 lk 92
++
Cagra.13424s0008.1.p 135 VS 136
86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MENSDTNDSE VFFWFHNQSH SHNNSEPNTV DEEGVCESHV LREITKTRKL TPIQLRLLEE 60 SFEKDKRLEP KRKLWLAEKL GLKPSQVAVW FQNRRARYKT KQLEHDCDSL KAIYAKLKTD 120 WDILYSQNQT LKNKVSLLKE KLRMQENLET QKLGENGISM KSYNTQYSEE EDGVGNQYSF 180 PELAVLGFYY DPTLTSSNLR L*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 93 | 101 | RRARYKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC000348 | 1e-102 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. |
GenBank | CP002684 | 1e-102 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |