PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1317s0069.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 616aa    MW: 69421 Da    PI: 6.4517
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1317s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.49.1e-1232296031374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          l++lL++cA+av+s d+++a++ L++++ ++s+dgd +qRla+yf+eAL+ar+++   + +++ +p+s+ts   +++ l+a+klf++++P
  Cagra.1317s0069.1.p 229 LRSLLTQCAQAVASFDQRRATEKLKEIRSHSSSDGDGTQRLAFYFAEALEARITGnIPPPVSSPFPSSTTS---MVDILKAYKLFVHTCP 315
                          6899***************************************************5556677777777777...**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                          i+   +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lRiTg++ p+sg   ++++eetg+rL++f+++++vpfe
  Cagra.1317s0069.1.p 316 IYVTDYFAANKSIYELAMTATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRITGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFE 405
                          ***************************************************************9************************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          fn+ +ak++e+++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+l
  Cagra.1317s0069.1.p 406 FNF-IAKKWESISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSL 494
                          ***.7************************************************************************************* PP

                 GRAS 268 fdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                          fd++++++ +e+  ++r+ +E+ell r++++v++ egaer++r et+++Wr r+ +aGFk++++s++++k+ak ++rk + + + +++++
  Cagra.1317s0069.1.p 495 FDMFDTTIQAEDeyKNRALLEKELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFKSATISKQIMKEAKEIVRKRYHRDFVIDSDN 584
                          *******99998899*****************************************************************999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +++++gWk+r ++++S+W+
  Cagra.1317s0069.1.p 585 NWMLQGWKGRVIYAFSCWK 603
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.022203583IPR005202Transcription factor GRAS
PfamPF035143.2E-120229603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGGSG SCCKPRNNLE SGNHLFPGFH EAQSQSQSSS PNDSPPSMCL  60
DNSPVLKYIN DMLMDEGDFV GESQDNLALQ AAERSFYEIL QQPSSESDQT TSSSDQNSGG  120
DPFFTSISNT TTSTDSAALV SSGESQRKYR HRSDEEDDLE TNRRNKQPAI FGSEMEELAV  180
KLEHVLLVCK SNQQEEESAI TKQSQPNRAG RAKGSSNKSK TRKSNSVDLR SLLTQCAQAV  240
ASFDQRRATE KLKEIRSHSS SDGDGTQRLA FYFAEALEAR ITGNIPPPVS SPFPSSTTSM  300
VDILKAYKLF VHTCPIYVTD YFAANKSIYE LAMTATTLHI VDFGVLYGFQ WPCLLLALSK  360
RPGGPPKLRI TGIELPQSGF RPSDRVEETG RRLKRFCDKF NVPFEFNFIA KKWESISLDE  420
IVINPGETTV VNCIHRLQYT PDETVSLDSP RDTVLKLFRD INPDLFVFAE INGMYNSPFF  480
MTRFREALFH FSSLFDMFDT TIQAEDEYKN RALLEKELLV RDAMSVISSE GAERFARPET  540
YKQWRVRILR AGFKSATISK QIMKEAKEIV RKRYHRDFVI DSDNNWMLQG WKGRVIYAFS  600
CWKPAGKLPN NHVNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-4523560424379Protein SCARECROW
5b3h_D7e-4523560424379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1317s0069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281984.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLR0EZX70.0R0EZX7_9BRAS; Uncharacterized protein
STRINGCagra.1317s0069.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]