PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13153s0001.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 367aa    MW: 41012.9 Da    PI: 9.0427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13153s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08175222455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cagra.13153s0001.2.p 175 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 222
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16169235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-8169226No hitNo description
Gene3DG3DSA:4.10.280.103.3E-16171236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMMNRTTPLT EFSADPGFAE RAARFSCFGS RSFNGRTNSN LPINNNVINN SGKLTRVSST  60
PALNGLVSPE LAPMIPGGEF SRKRKSLPKG KPKENPISTA SPSPSFSKTA EKKEDWNGKG  120
SKSLEEKVGK RRRDEEEDNV EEEGGEGNKS NNTKPPEPPK DYIHVRARRG QATDSHSLAE  180
RVRREKIGER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLSSVNDTRL  240
EFNVDALVSK DVVMIPSSNN NNRLHEEGLQ SKSSSHHHHQ QQQQLNNIYN NNSQLHPNNM  300
MLQSPMNSLE TSSLARSFTH LPTLTQFTDS ISQYQMFSEE DLQSIVGMGV AQQNPNHESQ  360
HMKLEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13153s0001.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886100.0AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280318.10.0transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLR0EWH50.0R0EWH5_9BRAS; Uncharacterized protein
STRINGCagra.13153s0001.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]