 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1310s0016.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 305aa MW: 35033.1 Da PI: 6.2412 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1310s0016.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.8 | 3e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lppGfrFhPtdeelv +yL +kv+g+ ++l e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat +gyWkatgk
Cagra.1310s0016.1.p 6 LPPGFRFHPTDEELVAYYLDRKVNGRAIDL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATGAGYWKATGK 94
79****************************.99**************95334455788******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
Cagra.1310s0016.1.p 95 DRTVES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
*****9.8999***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MAPMTLPPGF RFHPTDEELV AYYLDRKVNG RAIDLEIIPE VDLYKCEPWD LPEKSFLPGN 60
DMEWYFYSTR DKKYPNGSRT NRATGAGYWK ATGKDRTVES KKMKMGMKKT LVYYRGRAPH 120
GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGGEEEESTS VGKDEEEKEE 180
KKWRKDDGNY IEDESLKRAS AETSSSELTQ GVLVDEANSS SLFALHFSSS LLNDHDHLFS 240
NYPHDHQHHL PYHPPLQLQD FPQLSMNEAD IMSSIQQEFQ CRDSMNGTLD EIFSSSSTNF 300
PASL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-56 | 1 | 154 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-56 | 1 | 154 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-56 | 1 | 154 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-56 | 1 | 154 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 6e-56 | 1 | 154 | 12 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 6e-56 | 1 | 154 | 12 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK176278 | 0.0 | AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17. |
