PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1301s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 286aa    MW: 33458.8 Da    PI: 9.7428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1301s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.21.8e-111110132128
                  NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                          e+i+++d+++ +P++     + + +  +  + + +++ +gk  +   ksg W+  g+dk ++s+ +g++ g kk+L f  +r+p+  k +
  Cagra.1301s0009.1.p  11 EFIEDLDVFNKNPSEEF---H-SGSPAF-VIVKPRTEDSGK--TDGCKSGCWRIIGRDKLIKSEkTGKVLGFKKILKFCVKRKPREYKRS 93 
                          56777777777776642...1.223333.333344333333..333579*************98678889******************** PP

                  NAM 121 Wvmheyrl 128
                          Wvm+e+rl
  Cagra.1301s0009.1.p  94 WVMEEFRL 101
                          ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.6931119IPR003441NAC domain
SuperFamilySSF1019419.68E-234118IPR003441NAC domain
PfamPF023651.4E-532101IPR003441NAC domain
PROSITE profilePS5100514.033134281IPR003441NAC domain
SuperFamilySSF1019411.83E-16150279IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVVNGDSWHE EFIEDLDVFN KNPSEEFHSG SPAFVIVKPR TEDSGKTDGC KSGCWRIIGR  60
DKLIKSEKTG KVLGFKKILK FCVKRKPREY KRSWVMEEFR LTNNLNKKQG HVLCKIRFLF  120
EAETSSLLAK HFSYLPTTEA VPNPQMDNEA YLLQLILPSG ENNWPSYVTN SVYRLNPWKL  180
VNFRDRVFQK LGICIYANET CRDTDVCDGG KWMILHPERL IRSTSGETIG FKKAFQFYAT  240
KKRYQLLKWR SIYKKVTWTI EEYRRAEMLM QNKLLCVIKI TIEDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1301s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301654.21e-174uncharacterized protein LOC17896467
TrEMBLR0GFG40.0R0GFG4_9BRAS; Uncharacterized protein
STRINGCagra.1301s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-123NAC family protein