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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.12686s0005.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 342aa MW: 39040.6 Da PI: 7.4401 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.12686s0005.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.1 | 1.6e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkat 86
+ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkat
Cagra.12686s0005.1.p 9 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKAT 96
69****************************.99**************964444222455****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
Cagra.12686s0005.1.p 97 GRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
*******9.8999****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI 60
GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120
RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG GSSINSSDQH 180
IHEASNNNHT LQARSFMHRD SPYQLVRNHG ATPFELNKPD LALHQYPPIF HKPPTLGFDY 240
SSGLARDCES AASEGLQYQQ ACEPGLEVGT CETVPSQNHQ QGLSEWGMMD RLVTCHMGNE 300
DSSRGIRFED GNNNASTVVQ PSPTTNQLTL RSEMDFWGYS K*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 3e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 2e-51 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-51 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |
