|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.12655s0001.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
Family |
SRS |
Protein Properties |
Length: 158aa MW: 16019.3 Da PI: 6.5101 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.12655s0001.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 97.3 | 3e-30 | 12 | 110 | 67 | 154 |
DUF702 67 aaeaaskrkrelkskk.qsalsstklssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvf 143
++++ +k++r s++ q+a+s+t++ s+++++++etss +P +++++avf+cvrv++v++g++e+aYq++v+igGhvf
Cagra.12655s0001.1.p 12 STSSGTKKPRIVGSQQqQQATSHTST-SNTPPQSFETSSsrqdgggsreaWPGQIRAAAVFKCVRVTAVEEGDDEYAYQAVVKIGGHVF 99
36778899998855550555555555.555777888888899*********************************************** PP
DUF702 144 kGiLydqGlee 154
kG+LydqGle
Cagra.12655s0001.1.p 100 KGFLYDQGLEP 110
********985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 158 aa
Download sequence Send
to blast |
SGANPTAGSS LSTSSGTKKP RIVGSQQQQQ ATSHTSTSNT PPQSFETSSS RQDGGGSREA 60 WPGQIRAAAV FKCVRVTAVE EGDDEYAYQA VVKIGGHVFK GFLYDQGLEP KEGFPNMSDL 120 HLGGGANNHN GVSASGPILD PPNVYGGGGG SGGGFYG*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT020614 | 1e-158 | BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT5G12330.2 | 5e-63 | Lateral root primordium (LRP) protein-related |