PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12655s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 158aa    MW: 16019.3 Da    PI: 6.5101
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12655s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70297.33e-301211067154
                DUF702  67 aaeaaskrkrelkskk.qsalsstklssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvf 143
                           ++++ +k++r   s++ q+a+s+t++ s+++++++etss           +P +++++avf+cvrv++v++g++e+aYq++v+igGhvf
  Cagra.12655s0001.1.p  12 STSSGTKKPRIVGSQQqQQATSHTST-SNTPPQSFETSSsrqdgggsreaWPGQIRAAAVFKCVRVTAVEEGDDEYAYQAVVKIGGHVF 99 
                           36778899998855550555555555.555777888888899*********************************************** PP

                DUF702 144 kGiLydqGlee 154
                           kG+LydqGle 
  Cagra.12655s0001.1.p 100 KGFLYDQGLEP 110
                           ********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.7E-2610109IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.6E-3060108IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
SGANPTAGSS LSTSSGTKKP RIVGSQQQQQ ATSHTSTSNT PPQSFETSSS RQDGGGSREA  60
WPGQIRAAAV FKCVRVTAVE EGDDEYAYQA VVKIGGHVFK GFLYDQGLEP KEGFPNMSDL  120
HLGGGANNHN GVSASGPILD PPNVYGGGGG SGGGFYG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12655s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0206141e-158BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637004.11e-89protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK94e-84LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLR0HF131e-86R0HF13_9BRAS; Uncharacterized protein
STRINGCagra.12655s0001.1.p1e-110(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-63Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]