PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1262s0027.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 477aa    MW: 52822.9 Da    PI: 8.9109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1262s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05107129123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Cagra.1262s0027.1.p 107 FICEVCNKGFQRDQNLQLHKRGH 129
                          89******************988 PP
2zf-C2H214.20.00013184206123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Cagra.1262s0027.1.p 184 WKCEKCSKKYAVQSDWKAHAKTC 206
                          58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-6106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-7106129No hitNo description
PROSITE profilePS5015710.824107129IPR007087Zinc finger, C2H2
PfamPF121713.6E-5107129IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.026107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM0035545149179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4172205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-7179204No hitNo description
SMARTSM00355140184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MNKNPTKKSG FLVFRMMMNR EMIFHQQQQQ QQVEENMSNL TSASGDQASV SSGNRTETSG  60
SNLIHQQEQC FVPQSSIKRK RNQPGNPDPE AEVMALSPKT LMATNRFICE VCNKGFQRDQ  120
NLQLHKRGHN LPWKLKQRSN KDVVRKKVYI CPEPGCVHNH PSRALGDLTG IKKHFFRKHG  180
EKKWKCEKCS KKYAVQSDWK AHAKTCGTKE YKCDCGTLFS RRDSFITHRA FCDALAEESA  240
RAIPNPILIQ SSASPSRHGH HQTQQQNITF STSSQNVISS NNLHAPPMKQ EESHHHFQNI  300
PPWLASSNPN NPNGSSNNGN LFPPLASSAP TGRSNFHHPL AAMSATALLQ KAAQMGSKKS  360
STAPEEEEKP SRSSYNNLIT TTMAAMMTSP SGPAGFGFQD YYMMNHHGGG GEEAFNGSFV  420
AGDDKNDVVD DGGGETRDFL GLRSLMSHNE ILSFANNLGN CLNSSASEEQ QHSHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36180241364Zinc finger protein JACKDAW
5b3h_F2e-36180241364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133146KLKQRSNKDVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1262s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271940.0AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBankAY1504210.0AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632613.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLR0ISA40.0R0ISA4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1262s0027.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]