PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12562s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 299aa    MW: 32271.9 Da    PI: 7.7991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12562s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047119141123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++Fs+   L  H  +H
  Cagra.12562s0005.1.p 119 YECKTCNRTFSSFQALGGHRASH 141
                           99**********99999998887 PP
2zf-C2H213.30.00025197219123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  Cagra.12562s0005.1.p 197 HECSICGSEFTSGQALGGHMRRH 219
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-12118143IPR007087Zinc finger, C2H2
SuperFamilySSF576677.87E-9118141No hitNo description
PROSITE profilePS5015710.99119146IPR007087Zinc finger, C2H2
SMARTSM003550.063119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.1330.808.2E-4165257No hitNo description
SuperFamilySSF576677.87E-9192219No hitNo description
PfamPF139121.6E-11196220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743197219IPR007087Zinc finger, C2H2
SMARTSM003550.019197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTTTT TVTSTSSSAG GSGGRAVSDE  60
YNSAVSSPVS TDCTQEEEDM AICLIMLARG TVLPSPDLKN SRKPHQKISS DQNSSFYVYE  120
CKTCNRTFSS FQALGGHRAS HKKPRTSTST EEKTRSPLMQ PKSSLSEEGQ NSLFKVSGSA  180
LPSQASNIII NKANKVHECS ICGSEFTSGQ ALGGHMRRHR TAVTAASPVA ASTTVEVISR  240
NSSEEEENIE INLSRSMEQQ RKYLPLDLNL PAPEDDLRES KFQGIVFSAT PALIDCHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12562s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639937.10.0zinc finger protein ZAT5
SwissprotQ681X41e-174ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLR0FX680.0R0FX68_9BRAS; Uncharacterized protein
STRINGCagra.12562s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]