 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.1225s0041.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
Family |
NAC |
Protein Properties |
Length: 307aa MW: 33981.1 Da PI: 9.5336 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1225s0041.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 110.1 | 2.5e-34 | 59 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79
lp+G++F+Ptd+e++ e+L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++
Cagra.1225s0041.1.p 59 LPAGVKFDPTDQEVL-EHLEGKVKDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHtds 146
799**********99.99******9996665442222223554445**********.677788899******************744345 PP
NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l
Cagra.1225s0041.1.p 147 evggETRWHKTGKTRPVLA-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
5555778************.9*************6658999************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MTWCNDRNDV QTVERIIPSP TAAESPRASL PVSSHKTCPS CGHNFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV KDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVNKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RPVLAGGRVR GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKVFYQT QPRQCGGSVA AAATAKDRPY 240 LHGLGGSSGR HLHYHLHHNN SNVKSNGGGG GTAGAGEYYH NIPALISFNQ TGIQNHLAHD 300 SQPFIP*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | DQ056658 | 0.0 | DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds. |