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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.1225s0038.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 353aa MW: 40626.3 Da PI: 5.9892 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1225s0038.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.8 | 5.2e-50 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74
lppGfrFhP+deelv++yL++k+++k+ e + e+d++ +ePw+Lp +k + kewyfFs rd+kyatg r+
Cagra.1225s0038.1.p 10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdetlkdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRT 96
79**********************99977665551...1555566653599*************87788999****************** PP
NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
nrat sgyWkatgkd++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle
Cagra.1225s0038.1.p 97 NRATISGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
********************967778***************************985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDETL KDATDLVEID 60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR 120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKE DWVLCRVFNK GRDSSLQDNN 180
YNNDHQTQRL EIIDAPDLNY APNYNNQLPP LLSSPPHHQQ QEKMKIQVCD QWEQLTKQPS 240
RTTDHPYHQH CHHQTVACGW EQMIIGSLSS SSSHGPDHES LLNLLYVDNN NSVNITDDHH 300
QNYEKILLSP EMTSLEHDKT CMGSSSDGGM VSDLHVECGG LSFETDNLFP FH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT002462 | 0.0 | BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds. |
| GenBank | BT008741 | 0.0 | BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds. |
| Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
J. Exp. Bot., 2013. 64(16): p. 4877-93
[PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1275-91
[PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
BMC Plant Biol., 2015. 15: p. 266
[PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
Plant Physiol., 2016. 170(4): p. 2136-45
[PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
Plant Physiol., 2018. 176(1): p. 742-756
[PMID:29122985]
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