PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1225s0038.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 353aa    MW: 40626.3 Da    PI: 5.9892
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1225s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.2e-50101521129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                          lppGfrFhP+deelv++yL++k+++k+           e          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+
  Cagra.1225s0038.1.p  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdetlkdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRT 96 
                          79**********************99977665551...1555566653599*************87788999****************** PP

                  NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Cagra.1225s0038.1.p  97 NRATISGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                          ********************967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-568170IPR003441NAC domain
PROSITE profilePS5100553.64310170IPR003441NAC domain
PfamPF023651.3E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDETL KDATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKE DWVLCRVFNK GRDSSLQDNN  180
YNNDHQTQRL EIIDAPDLNY APNYNNQLPP LLSSPPHHQQ QEKMKIQVCD QWEQLTKQPS  240
RTTDHPYHQH CHHQTVACGW EQMIIGSLSS SSSHGPDHES LLNLLYVDNN NSVNITDDHH  300
QNYEKILLSP EMTSLEHDKT CMGSSSDGGM VSDLHVECGG LSFETDNLFP FH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-451017015168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1225s0038.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284018.10.0NAC domain-containing protein 21/22
SwissprotQ84TE63e-58NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLR0F6070.0R0F607_9BRAS; Uncharacterized protein
STRINGCagra.1225s0038.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]