 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1211s0017.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
C3H |
| Protein Properties |
Length: 388aa MW: 43128.2 Da PI: 7.3752 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1211s0017.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28 | 3.8e-09 | 105 | 129 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C f++ GtC+ G+ C+FaHg
Cagra.1211s0017.1.p 105 YKTRMCAKFRA-GTCRNGELCNFAHG 129
9**********.*************8 PP
|
| 2 | zf-CCCH | 19.6 | 1.7e-06 | 192 | 206 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F+H
Cagra.1211s0017.1.p 192 F-GeECPYGDRCNFIH 206
5.449*********** PP
|
| 3 | zf-CCCH | 43.9 | 3.9e-14 | 271 | 297 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f tG+C++Gd+C+FaHg+
Cagra.1211s0017.1.p 271 WKTRLCMKFEITGQCPFGDKCHFAHGQ 297
8************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 7.8E-15 | 102 | 137 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.85E-8 | 103 | 135 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.793 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-4 | 104 | 130 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-5 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.455 | 181 | 209 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-6 | 181 | 207 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 181 | 208 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-8 | 183 | 207 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.5E-10 | 267 | 301 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-15 | 269 | 300 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.507 | 270 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-11 | 271 | 297 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPYGGW NQTQMTDSMA NPVNNEQGDL HSLSESQSQS QSSQQLQPSL 60
KRPRLVDDNV FNPASSFPPP TSSNPWMVPS LNPPPVNKGT ANIFYKTRMC AKFRAGTCRN 120
GELCNFAHGI EDLRQPPSNW QEIVGPPGQD RDRERERERE RERPSLAPVG NNNWEDDQKI 180
ILRMKLCRKF CFGEECPYGD RCNFIHEDLS KFREDSGKLR ESSVISVGTT AADLQSVDNS 240
TASNHIEVSR QGSIPVPVPM NNGGAVKTVY WKTRLCMKFE ITGQCPFGDK CHFAHGQAEL 300
HNSVGRVEGE AVNGVASLSK QTVVPANEAF AMKPTAQLTA DSSGLNEEGR RKKCLLKWSD 360
SKKINRIYGD WIDDLPVGQK STKPVES*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 152 | 162 | RERERERERER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY037226 | 0.0 | AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
| GenBank | AY081745 | 0.0 | AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
