PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12117s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 238aa    MW: 26781.6 Da    PI: 8.9242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12117s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-173379148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          r+ WT+ Ed +l ++v+++G++tW++Ia++++ gR++k c+ rw+ +l
  Cagra.12117s0004.1.p 33 RDFWTPSEDMKLRELVAEYGPRTWTKIAEKIQ-GRSAKTCRARWFRHL 79
                          678*****************************.***********9886 PP
2Myb_DNA-binding41.92.3e-1385129147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++++T  E+ +l+d+ +++G++ W++Ia++++ gRt++ +++ w  +
  Cagra.12117s0004.1.p  85 KKAFTDKEEAILLDGYAKHGNK-WTLIAKHLP-GRTDEAVVNNWTRL 129
                           679*******************.*********.********999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.3632883IPR017930Myb domain
SMARTSM007174.7E-143281IPR001005SANT/Myb domain
SuperFamilySSF466894.77E-2633126IPR009057Homeodomain-like
PfamPF002494.0E-163679IPR001005SANT/Myb domain
CDDcd001672.10E-133679No hitNo description
Gene3DG3DSA:1.10.10.601.5E-233686IPR009057Homeodomain-like
PROSITE profilePS5129415.04784134IPR017930Myb domain
SMARTSM007174.7E-1284132IPR001005SANT/Myb domain
PfamPF002491.4E-1185128IPR001005SANT/Myb domain
CDDcd001674.01E-987130No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1887133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKSPSNEVGE NNASLERMNR VEIKNKEKVI SFRDFWTPSE DMKLRELVAE YGPRTWTKIA  60
EKIQGRSAKT CRARWFRHLD PAISKKAFTD KEEAILLDGY AKHGNKWTLI AKHLPGRTDE  120
AVVNNWTRLM KKKNRKPKQS ASLLEVTTNV DTAEDSASEL TDQAMQYSSA LHYGLPIMYA  180
VPLAMAAPHV SMAIFQPSSS SNAVDTMEAE HIETKIPPKF IDFLGVEESV KVKEETA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-273613330127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12117s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285492.21e-169transcription factor MYB56
TrEMBLR0H1961e-168R0H196_9BRAS; Uncharacterized protein
STRINGCagra.12117s0004.1.p1e-177(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2738433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.23e-39myb domain protein 110