PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CO-like

Protein Properties

Length: 283aa MW: 31404 Da PI: 5.6429

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1194s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.6e-06	14	56	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ + + +Ce ++ +lC++C H H++v Cagra.1194s0065.1.p 14 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrlasrHERV 56 57****99****************999556677778776 PP
2	zf-B_box	36.5	9.8e-12	56	101	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C e+H+ H++vp+ Cagra.1194s0065.1.p 56 VRVCQSCESAPAAFFCKADAASLCTACDAEIHSAnplarrHQRVPI 101 689***************************668999999997 PP
3	CCT	68.9	1.3e-23	213	255	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+ Cagra.1194s0065.1.p 213 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 255 9****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.0E-9	11	58	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.623	11	58	IPR000315	B-box-type zinc finger
CDD	cd00021	3.33E-7	14	58	No hit	No description
PROSITE profile	PS50119	12.23	54	101	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.2E-9	56	101	IPR000315	B-box-type zinc finger
CDD	cd00021	2.68E-9	57	101	No hit	No description
SMART	SM00336	2.3E-12	59	101	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.44	213	255	IPR010402	CCT domain
Pfam	PF06203	2.3E-17	213	255	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0009909	Biological Process	regulation of flower development
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRLA SRHERVRVCQ 60 SCESAPAAFF CKADAASLCT ACDAEIHSAN PLARRHQRVP ILPLSANSCD SMAPSEADDA 120 DNDDDDREVA SWLLPNPGKT SGNQNNGFLF GVEYLDLVDY SSSLDNQFDD HHVVPESTAS 180 DITVHHPRTT RETIDQLSGP PTPMVQQLTP MEREARVLRY REKKKTRKFD KTIRYASRKA 240 YAEIRPRIKG RFAKRIEIEA EAEEIFSASL MSETGYGIVP SF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Does not affect flowering time.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1194s0065.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ180277	0.0	JQ180277.1 Arabidopsis halleri subsp. halleri putative flowering-time constans protein (COL2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485482.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 2
Swissprot	Q96502	1e-172	COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	I3RT18	1e-176	I3RT18_ARALL; Putative flowering-time constans protein
STRING	Cagra.1194s0065.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2128	26	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-156	CONSTANS-like 2

Link Out ? help Back to Top
Phytozome	Cagra.1194s0065.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]