PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1189s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | CPP | ||||||||
Protein Properties | Length: 629aa MW: 68730.1 Da PI: 7.6261 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.8 | 6.9e-16 | 343 | 381 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk+ Cagra.1189s0049.1.p 343 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKS 381 689**********************************97 PP | |||||||
2 | TCR | 51.2 | 2.4e-16 | 428 | 466 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Cagra.1189s0049.1.p 428 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 466 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.7E-19 | 342 | 383 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.458 | 343 | 468 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-11 | 345 | 380 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-17 | 428 | 469 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.7E-12 | 430 | 466 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MDTPQKSITQ IGTPVSKLKA EDSPVFNYIC SLSPIKSTKS IPITHTLSSL NFTSPPSVFT 60 SPHAVSHKES RFRSQVNSSD HSKDGVGSNE EAGSIGEKGK EEALTEIEQS QIPKNECNTP 120 RVANDVRDNG CCEDGGMNLV KMCDNVKPKS DTPDWGTLIS ATTELIYNLT SESEAYSCLL 180 KRTSNSGEHV RGGTMSTLES VSKTNVANNE TESFDDLSIS HRGVRRRCLD FEIPRNNQQT 240 LGESSSSCVV PSIGLHLNAI AMSSKDNNVV NEYSFSGNIK VGSQSFTTSD LHSKHHIVRE 300 NEIGKDAGQA LEEFPKSSAL EGLPISPKKK RRKSEQSGEG ESSCKRCNCK KSKCLKLYCE 360 CFAAGVYCIE PCSCIDCFNK SIHEDVVLAT RKQIESRNPL AFAPKVIRSS DSIIEVGDDT 420 SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE 480 NEVSGKIVTT KTQSNVELFN PLPSTPMPLR QPLAQLPIPS NNRLLPSVSH FHHGASGSSS 540 SGIYNIRKPD MSLLSHSRIE TITEDIDDDM SENLIQSPLN NMKAVVSPNS KRVSLQHLDS 600 SETTPWRRNG GRKLILSIPT FPSLTPHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 345 | 465 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 345 | 465 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 327 | 331 | KKKRR |
2 | 327 | 332 | KKKRRK |
3 | 328 | 332 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00044 | PBM | Transfer from AT3G22760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1189s0049.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299680.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
Swissprot | Q8L548 | 0.0 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | R0I7X4 | 0.0 | R0I7X4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1189s0049.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1189s0049.1.p |
Publications ? help Back to Top | |||
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