PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CPP

Protein Properties

Length: 629aa MW: 68730.1 Da PI: 7.6261

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1189s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.8	6.9e-16	343	381	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk+ Cagra.1189s0049.1.p 343 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKS 381 689**********************************97 PP
2	TCR	51.2	2.4e-16	428	466	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Cagra.1189s0049.1.p 428 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 466 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.7E-19	342	383	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.458	343	468	IPR005172	CRC domain
Pfam	PF03638	1.4E-11	345	380	IPR005172	CRC domain
SMART	SM01114	3.7E-17	428	469	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.7E-12	430	466	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MDTPQKSITQ IGTPVSKLKA EDSPVFNYIC SLSPIKSTKS IPITHTLSSL NFTSPPSVFT 60 SPHAVSHKES RFRSQVNSSD HSKDGVGSNE EAGSIGEKGK EEALTEIEQS QIPKNECNTP 120 RVANDVRDNG CCEDGGMNLV KMCDNVKPKS DTPDWGTLIS ATTELIYNLT SESEAYSCLL 180 KRTSNSGEHV RGGTMSTLES VSKTNVANNE TESFDDLSIS HRGVRRRCLD FEIPRNNQQT 240 LGESSSSCVV PSIGLHLNAI AMSSKDNNVV NEYSFSGNIK VGSQSFTTSD LHSKHHIVRE 300 NEIGKDAGQA LEEFPKSSAL EGLPISPKKK RRKSEQSGEG ESSCKRCNCK KSKCLKLYCE 360 CFAAGVYCIE PCSCIDCFNK SIHEDVVLAT RKQIESRNPL AFAPKVIRSS DSIIEVGDDT 420 SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE 480 NEVSGKIVTT KTQSNVELFN PLPSTPMPLR QPLAQLPIPS NNRLLPSVSH FHHGASGSSS 540 SGIYNIRKPD MSLLSHSRIE TITEDIDDDM SENLIQSPLN NMKAVVSPNS KRVSLQHLDS 600 SETTPWRRNG GRKLILSIPT FPSLTPHH*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MDTPQKSITQ IGTPVSKLKA EDSPVFNYIC SLSPIKSTKS IPITHTLSSL NFTSPPSVFT  60
SPHAVSHKES RFRSQVNSSD HSKDGVGSNE EAGSIGEKGK EEALTEIEQS QIPKNECNTP  120
RVANDVRDNG CCEDGGMNLV KMCDNVKPKS DTPDWGTLIS ATTELIYNLT SESEAYSCLL  180
KRTSNSGEHV RGGTMSTLES VSKTNVANNE TESFDDLSIS HRGVRRRCLD FEIPRNNQQT  240
LGESSSSCVV PSIGLHLNAI AMSSKDNNVV NEYSFSGNIK VGSQSFTTSD LHSKHHIVRE  300
NEIGKDAGQA LEEFPKSSAL EGLPISPKKK RRKSEQSGEG ESSCKRCNCK KSKCLKLYCE  360
CFAAGVYCIE PCSCIDCFNK SIHEDVVLAT RKQIESRNPL AFAPKVIRSS DSIIEVGDDT  420
SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE  480
NEVSGKIVTT KTQSNVELFN PLPSTPMPLR QPLAQLPIPS NNRLLPSVSH FHHGASGSSS  540
SGIYNIRKPD MSLLSHSRIE TITEDIDDDM SENLIQSPLN NMKAVVSPNS KRVSLQHLDS  600
SETTPWRRNG GRKLILSIPT FPSLTPHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	345	465	12	120	Protein lin-54 homolog
5fd3_B	1e-16	345	465	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	331	KKKRR
2	327	332	KKKRRK
3	328	332	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00044	PBM	Transfer from AT3G22760	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1189s0049.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299680.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	R0I7X4	0.0	R0I7X4_9BRAS; Uncharacterized protein
STRING	Cagra.1189s0049.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.1189s0049.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]