PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1157s0017.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 500aa    MW: 53718.3 Da    PI: 6.0177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1157s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09325373355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cagra.1157s0017.1.p 325 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 373
                          58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17320391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-11320377No hitNo description
PROSITE profilePS5088815.478322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17323390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6325373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDISEEKRNR DSAVNYDSVD NPAVDWQVSS SNPVSAPIDS YTQENLISAC PSSCSPSQMM  60
DSFGQTLWYD PTSVQPVGYG GFSVQNNGGN ASSSSFRGNV DRSLEMGWNL PNLLPPKGNG  120
LFLPNASSFL PPSMAQFPAD SGFIERAARF SLFSGGNFSD MVNQPLGNPE AIGLFLQGGG  180
TMQGQCQSNE LNVGELHNDA STVVKEPNVR SSEQLKPNVP GSGNVSEDTQ SSGGNGQKGG  240
ETSSKGLDTR KRKRNGQNSE AAQSHRSQQS EEEPDSNGDK KRNNEQSPNS PGKKTNSGKQ  300
QGKQSSDPPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV  360
MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGSS STTPFPPNMS  420
MAYPPLPHGF MQQTLSSIGR TISSPLSPTN GGFKRQDTNG WEGDLQNVIH INYGAGEVTP  480
DPQAAATASL PAANMKVEP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1157s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302168.10.0transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLR0GH970.0R0GH97_9BRAS; Uncharacterized protein
STRINGCagra.1157s0017.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]