PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1150s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 29583 Da PI: 4.9749

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1150s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.4e-17	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k Cagra.1150s0002.1.p 70 KKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 123 456899**********************************************99 PP
2	HD-ZIP_I/II	122.7	1.8e-39	69	161	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++d+l++ene L++++++L+++ Cagra.1150s0002.1.p 69 EKKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKRQFDNLRDENEVLQTQNQKLQAQ 158 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Cagra.1150s0002.1.p 159 VMA 161 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-19	53	127	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-18	57	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	65	125	IPR001356	Homeobox domain
SMART	SM00389	3.0E-17	68	129	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-15	70	123	IPR001356	Homeobox domain
CDD	cd00086	2.30E-14	70	126	No hit	No description
PRINTS	PR00031	4.5E-6	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.5E-6	105	121	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.4E-15	125	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSCNNGLAFF PPNFSLQNHH QEEEDHPQLL QDFNGFLGKR SPMNNVQGFC NLEMNGEEEY 60 SDDGSKMGEK KRRLNMEQLK TLEKNFELGN KLESDRKLEL ARALGLQPRQ IAIWFQNRRA 120 RSKTKQLEKD YDILKRQFDN LRDENEVLQT QNQKLQAQVM ALKSREPIES INLNKDMEGS 180 CSDRSENISG EIRPPEMDSQ FALGHPPTAT TMQFFQNPSS EQRMVKEENS ISNMFCGIDD 240 QSGFWPWLDQ QHYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	125	RRARSKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1150s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA3). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228056	0.0	AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBank	AY084913	0.0	AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBank	BT009727	0.0	BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304126.1	0.0	homeobox-leucine zipper protein ATHB-23
Swissprot	Q8LFD3	1e-177	ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBL	R0I458	0.0	R0I458_9BRAS; Uncharacterized protein
STRING	Cagra.1150s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26960.1	1e-180	homeobox protein 23

Link Out ? help Back to Top
Phytozome	Cagra.1150s0002.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]