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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.11216s0002.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
MYB |
| Protein Properties |
Length: 464aa MW: 52340.4 Da PI: 8.1052 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.11216s0002.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.1 | 4.8e-19 | 215 | 261 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd+llv++v+++G++ W+ Ia++++ gR +kqc++rw+++l
Cagra.11216s0002.1.p 215 KGQWTSEEDKLLVKLVERHGTKKWSQIAKMLQ-GRVGKQCRERWHNHL 261
799*****************************.*************97 PP
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| 2 | Myb_DNA-binding | 59.1 | 9.9e-19 | 267 | 309 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+++WT+eEd++l++a+k+ G++ W+ Iar+++ gRt++ +k++w+
Cagra.11216s0002.1.p 267 KDSWTEEEDQILIEAHKEIGNR-WAEIARKLP-GRTENTIKNHWN 309
679*******************.*********.***********8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1904095 | Biological Process | negative regulation of endosperm development |
| GO:2000692 | Biological Process | negative regulation of seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MEFESVIKMH YPYLAAVIYD DSSALKDLHP SLTDDFSCVP SVHHKSIQIN LGMPHLPPKV 60
ISNPYLYLPN FTSKPNTHEI PSKETIKGIT PPPCTGAFET YFHGTSNDQS FSGMANTTSQ 120
TIESNVSDVT HDNTMWKNDQ NQGFIFRTES TFNLTMVDSN QFNVVKPVLS TNEDTIIARC 180
QNDQVVIKTE QLKKKNKRLH MRRICKPAKK TSIVKGQWTS EEDKLLVKLV ERHGTKKWSQ 240
IAKMLQGRVG KQCRERWHNH LRPDIKKDSW TEEEDQILIE AHKEIGNRWA EIARKLPGRT 300
ENTIKNHWNA TKRRQHSRRA RGKDEISLAL GSNILQNYIR SITYKDEALM ITNTNIGPKN 360
MEGKGKNLMV AVPKYEEDES KYIVDGVMNL GLDDGRKMPS STAVSTTCAS GSASTSGYAS 420
GSGSGVTVEF DEPMTDSWMV MHGCDEIMMN EIALLEMINH GHL*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 191 | 197 | LKKKNKR |
| 2 | 191 | 209 | LKKKNKRLHMRRICKPAKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
