PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1111s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 688aa    MW: 78181.9 Da    PI: 5.073
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1111s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.81.6e-15229278555
              G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           Wt+e H +F+ a++ L G +   Pk+ile+m+ + Lt  +++SHLQkY+ 
  Cagra.1111s0014.1.p 229 LWTNERHMKFLAAISIL-GDNDLRPKSILEIMNDPNLTQRQIASHLQKYKA 278
                          5****************.89999**************************85 PP
2Response_reg27.31.9e-10151211108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l++d + +    l+++le+    +v ++d +++al ++++++  +++++  iemp++d + +l+ + +++  +p i++  +   +   +
  Cagra.1111s0014.1.p  15 ILLIDHDATSVASLTSMLEQFSK-RVMSVDAASKALSMIEKQKkdIGIVIANIEMPQIDSHSFLTALLQRN--IPLILINPEIRTKKPSD 101
                          799****************8888.999999999999999666556**********************8877..89999988888888888 PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                           lk  a   l Kp+++ ++ 
  Cagra.1111s0014.1.p 102 LLKNSACFSLDKPISEIDIK 121
                          88888877777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1212142IPR011006CheY-like superfamily
PROSITE profilePS5011022.89914128IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.2E-1414142No hitNo description
PfamPF000729.4E-815122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-616128No hitNo description
SuperFamilySSF466896.99E-14226282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-17229282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-15229277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAENVIPQCV NDIFILLIDH DATSVASLTS MLEQFSKRVM SVDAASKALS MIEKQKKDIG  60
IVIANIEMPQ IDSHSFLTAL LQRNIPLILI NPEIRTKKPS DLLKNSACFS LDKPISEIDI  120
KNMWQRVLPR QSQEFKKINM AENQENAIDK DIDEIENFRA SLKRQRTSQA SLLGQRNFIK  180
PYTTSEAYHK RKGMANIEWK TKPCYQNEVE NKRKEWIKVD DNVGRRMSLW TNERHMKFLA  240
AISILGDNDL RPKSILEIMN DPNLTQRQIA SHLQKYKAQI ERISDVLPRN EWKSTDKTIE  300
YPSDYDYPFK ASYLTKNVIA SNSLWCCLRK KNSSSSSSIN QFSLKNPIDA RKKSMPKLHR  360
GKKLDLSNHS HSGNILNKSS MNVDYVPSTI SSNLAYDNYP IDNANHIGMV STGVGSEILP  420
MISNLPNTCA SQMETARISI SHYDPNPLHP HNLVLETSVN QIDLDFTSIP DSFFPQADSC  480
NLEENYFLPN NIMSPLETNI DQMNLAPSIE NHSHHGINII QSEVDNPIDI GFSEVSILPQ  540
EESTNHMGIV SCETNMSNFE TNANEDFDIP IEDLISFDTD IEKDMASWLE ESGFSERNNH  600
LSQSYLNHNV AFRKPMDSTP DTSMVGHDQS IAMNMGSARM PHNTMESSEY HNAEAGKQND  660
NIEGGDDFED YRDYIDWIDE EVMKKDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1111s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644293.10.0putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLR0I9140.0R0I914_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1111s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6