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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.10862s0002.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
bHLH |
| Protein Properties |
Length: 566aa MW: 64305.6 Da PI: 4.7136 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.10862s0002.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.3 | 5.7e-13 | 316 | 361 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ ++ErrRR+++N+++ Lr+l+P +Kl+ a+iL A++Y+k+Lq
Cagra.10862s0002.1.p 316 NLMAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 361
5589*********************7.....7******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009555 | Biological Process | pollen development |
| GO:0048657 | Biological Process | anther wall tapetum cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 566 aa
Download sequence Send
to blast |
MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTELIA ENGTEEFSFG 60
SCRDVMFHHP RTKSCEFLSH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP SFMQETICTR 120
VLIPISGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGDEV ESKPYGMLSG 180
EINQKGSKDE DMMNLPSSYD VSADQMRLNF LPQISDYEGQ QHLKMKSDYH HETLGYLQEN 240
GNKEMMGMNP FNTMAEDGIP VIGEPSLLVN EQQVANDKEM NENGRLDSGS DCSDQIDDED 300
DPKYKKKSGK ISQAKNLMAE RRRRKKLNDR LYALRSLVPR ITKLDRASIL GDAINYVKEL 360
QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHP GLSCNSNIPN VKQDVDLDNS 420
NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK PGGFTRLMEA LDSLGLEVTN ANTTRYLSLV 480
SNVFKVEKSD NEMVQAEHVR NSLLEITRNT SRGWQDDQMA TGSMQNEKND VDYQHYDDHQ 540
HHHHPFDHQM NHHHHQHINH YHNNQ*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 304 | 325 | KKKSGKISQAKNLMAERRRRKK |
| 2 | 319 | 326 | ERRRRKKL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Jiang J,Zhang Z,Cao J
Pollen wall development: the associated enzymes and metabolic pathways.
Plant Biol (Stuttg), 2013. 15(2): p. 249-63
[PMID:23252839] - Xu J, et al.
ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis.
Plant Cell, 2014. 26(4): p. 1544-1556
[PMID:24781116] - Qian H, et al.
Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis.
Ecotoxicology, 2015. 24(1): p. 163-71
[PMID:25348600] - Xiong SX, et al.
The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana.
Plant J., 2016. 88(6): p. 936-946
[PMID:27460657] - Ferguson AC, et al.
Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis.
New Phytol., 2017. 213(2): p. 778-790
[PMID:27787905] - Lou Y, et al.
Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
New Phytol., 2018. 217(1): p. 378-391
[PMID:28940573] - Bi H,Fan W,Zhang P
C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1689
[PMID:29021807]
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