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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.10637s0001.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
MYB_related |
| Protein Properties |
Length: 229aa MW: 26061.1 Da PI: 9.7597 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.10637s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.4 | 6.7e-18 | 32 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
Cagra.10637s0001.1.p 32 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 77
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MDRTGGHTSG LNRTGKSCRL RWVNYLHPGL KRGKMTPQEE RLVLELHAKW GNRWSKIARK 60
LPGRTDNEIK NYWRTHMRKK AQEKKRPMSP TSSFSNCSSS SMTTTTTNTQ DTSCHSRKSS 120
GKVSFYDTGG SRSTGDIMMN QETEDVYSMD DIWREIDHSP VNIIKPVKDI YSEHSHCLSY 180
STLASPTWES SLDSIWNMDG DKSKMSSSFG NDQFPFCFQH SRSPWSSG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 3e-18 | 7 | 81 | 33 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 8e-18 | 7 | 81 | 87 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 8e-18 | 7 | 81 | 87 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 5e-18 | 13 | 81 | 60 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 3e-18 | 7 | 81 | 33 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 3e-18 | 7 | 81 | 33 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ075256 | 0.0 | DQ075256.1 Arabidopsis thaliana MYB transcription factor MYB48-2 (At3g46130) mRNA, complete cds, alternatively spliced. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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