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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1062s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21761.9 Da PI: 8.6941 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 17 | 65 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++s ++eL +llP+ +s+ + L +A +YIk+Lq Cagra.1062s0041.1.p 17 RKTIEKNRRMQMKSLYSELISLLPHH---SSREtSALPDQLDEAAKYIKKLQ 65 5789*********************7...566635567*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.429 | 12 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-8 | 17 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.24E-9 | 17 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-4 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-5 | 18 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEPSHSNTAQ SRRSVDRKTI EKNRRMQMKS LYSELISLLP HHSSRETSAL PDQLDEAAKY 60 IKKLQVNVEK KRERKRKLVA STNFEKLNSA GSSLASSSVD VSVPKRLPKI EIQEMGSILH 120 IFLVTSLEHK FVFGEIIRVL TEELEAEITH AGYSIVDDAV FHTLHCKVEE CDYGARSQIP 180 ERLEKFVNSV N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 77 | EKKRERKRKL |
2 | 70 | 77 | KRERKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1062s0041.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493686 | 1e-170 | AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284564.2 | 1e-126 | transcription factor bHLH162 isoform X1 | ||||
Swissprot | F4JIJ7 | 1e-106 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | R0F6L9 | 1e-125 | R0F6L9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1062s0041.1.p | 1e-138 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-100 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1062s0041.1.p |
Publications ? help Back to Top | |||
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