PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10445s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 386aa    MW: 42991.4 Da    PI: 7.2178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10445s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-165499147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++e d  l ++v++ G+++W++I+r ++ gR++k+c++rw + 
  Cagra.10445s0001.1.p 54 KGPWSPEQDAALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 99
                          79******************************.***********985 PP
2Myb_DNA-binding48.71.7e-15106149146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++++ eEd  +  a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Cagra.10445s0001.1.p 106 KKPFSDEEDHMIMSAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 149
                           689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.44449104IPR017930Myb domain
SuperFamilySSF466899.36E-3051147IPR009057Homeodomain-like
SMARTSM007171.1E-1353102IPR001005SANT/Myb domain
PfamPF002498.0E-155499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2355107IPR009057Homeodomain-like
CDDcd001671.08E-125698No hitNo description
SMARTSM007172.3E-13105153IPR001005SANT/Myb domain
PROSITE profilePS5129420.009105155IPR017930Myb domain
PfamPF002494.2E-14106149IPR001005SANT/Myb domain
CDDcd001671.37E-9108151No hitNo description
Gene3DG3DSA:1.10.10.603.2E-23108154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNAAISHPPE LMPSLNLSMG CDGSEDAINA AVEEELAELE KGDSSSGGGR SKVKGPWSPE  60
QDAALTRLVT KCGPRNWTLI SRGIPGRSGK SCRLRWCNQL DPCLKKKPFS DEEDHMIMSA  120
HAVHGNKWAV IAKLLPGRTD NAIKNHWNSS LRRKPADVWK DHQGIPSTEI YQVHPSKVRK  180
ISNETSPREH LPREEVNSFM APVVNDDQMA NEPNEPLLEQ KSKPDVYRPV ARMGAFSVCK  240
QGYMNHHMTP CEGPLVHASR PGSLAGKFLQ SLFYEPIVPS KCGRGCCNHS DNKTLCNSVL  300
GPEFVDYEEH SSAELDRELI SISTDLNNIA WIRTGSDNKY FKEAEQSLKA DDQYHHREYA  360
HPKFTGMVNN SVSSQMLRQD LRALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-37531543104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-37531543104C-Myb DNA-Binding Domain
1msf_C2e-37531543104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.10445s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294397.10.0transcription factor MYB25
SwissprotO041920.0MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HPT00.0R0HPT0_9BRAS; Uncharacterized protein
STRINGCagra.10445s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-170myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]