PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.10427s0037.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C3H

Protein Properties

Length: 437aa MW: 47672.2 Da PI: 9.4253

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.10427s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6e-06	392	413	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ff r C+ G++C + H+ Cagra.10427s0037.1.p 392 QCMFFNRAKGCRLGESCLYLHD 413 5********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.075	388	415	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MKKTGKKKSS RVSWASDSLL SQVKMFLTDD CPAEVASSNL PPGFEASDYA SRRTSTIPLI 60 KWIPPPKFII DDAFLVGTGG DSTETPSENL RIAKVLEAFY PHRSVIPARP SVSPAVEQSH 120 YDDSNTPIIR LTPIEDDRAT ALQSSSHHFE APSAVSLLGP ELSLAASAAL SALTKEQGCQ 180 VDAALLVKLL SDPKIVANLL NDMNSKPLET ANGDSMNTDI TNPRLHIPRN GVPHNVHVPV 240 QSSATVPPLP KPTQPMSTAL SMKPTLVPLS SGIKPLTRVE EEDSYTAAPL KPSPVENVLV 300 SEQKTQSLNV SASSTRDINR IPESAQTETD LQIRNGNINR DDQVSAKPVK NLDYFKNLIR 360 EHGGVSPATN QNNNYKGRVD DMKVVKVKIQ KQCMFFNRAK GCRLGESCLY LHDRSKRLWA 420 DVAPRFPKAK RLKYGS*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MKKTGKKKSS RVSWASDSLL SQVKMFLTDD CPAEVASSNL PPGFEASDYA SRRTSTIPLI  60
KWIPPPKFII DDAFLVGTGG DSTETPSENL RIAKVLEAFY PHRSVIPARP SVSPAVEQSH  120
YDDSNTPIIR LTPIEDDRAT ALQSSSHHFE APSAVSLLGP ELSLAASAAL SALTKEQGCQ  180
VDAALLVKLL SDPKIVANLL NDMNSKPLET ANGDSMNTDI TNPRLHIPRN GVPHNVHVPV  240
QSSATVPPLP KPTQPMSTAL SMKPTLVPLS SGIKPLTRVE EEDSYTAAPL KPSPVENVLV  300
SEQKTQSLNV SASSTRDINR IPESAQTETD LQIRNGNINR DDQVSAKPVK NLDYFKNLIR  360
EHGGVSPATN QNNNYKGRVD DMKVVKVKIQ KQCMFFNRAK GCRLGESCLY LHDRSKRLWA  420
DVAPRFPKAK RLKYGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.10427s0037.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279622.1	0.0	zinc finger CCCH domain-containing protein 68
Swissprot	Q9FH61	0.0	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	R0GJQ8	0.0	R0GJQ8_9BRAS; Uncharacterized protein
STRING	Cagra.10427s0037.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Link Out ? help Back to Top
Phytozome	Cagra.10427s0037.1.p