PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1013s0062.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 266aa    MW: 29512.7 Da    PI: 4.7471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1013s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1976127156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s+y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  Cagra.1013s0062.1.p  76 SRYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 127
                          79********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1276126IPR001471AP2/ERF domain
CDDcd000188.08E-3276135No hitNo description
SuperFamilySSF541711.96E-2276135IPR016177DNA-binding domain
PROSITE profilePS5103224.2177134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3177135IPR001471AP2/ERF domain
SMARTSM003805.0E-3677140IPR001471AP2/ERF domain
PRINTSPR003673.1E-117889IPR001471AP2/ERF domain
PRINTSPR003673.1E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MCGGAVISDY ITPSRSDQDN TGRGRKSSWT SKAVFDCSID DFNGDFEEFE PDLSSTRKRA  60
SGPISSALDG RKKQSSRYRG IRRRPWGRWA AEIRDPIKGV RVWLGTFNTA EDAARAYDLE  120
AKRIRGAKAK LNFPNESFKK RKDVAKTVQL IEEKKHEADL GLAVASSVPS SSHTDFLWEE  180
NNADTLLIDT QWLEDVIMGD EKKKQETNGS EEEGNVNAAL LSEELLAFEN QTECFSQIPF  240
MEGGCDSLTS LSSLLGGDNN IDLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2278134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1013s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302701.11e-174ethylene-responsive transcription factor ERF073
SwissprotQ8H0T51e-102ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLR0I0A11e-172R0I0A1_9BRAS; Uncharacterized protein
STRINGCagra.1013s0062.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-90ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]