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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1013s0019.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NF-YA |
Protein Properties |
Length: 343aa MW: 37738.8 Da PI: 10.1295 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1013s0019.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 104.2 | 1.1e-32 | 180 | 236 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
Cagra.1013s0019.1.p 180 NEPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 236
59****************************.**************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MMHQMNKKDS ATHSTLPYLN TSISWGLAPT DSVAVNRRGS AESPRLKVDA RPGGHVQTTK 60 QISFQDQDSS STQSTGQSYT EVASSGDDNP SRQISFSAKS GSEETQRKGF AANPKSGSMT 120 GYPNIHFAPP AQPNFSFHYA DPHFGGLLAA TYLPHAPTCN PHMVGTVQGR VPLPGELTEN 180 EPVFVNAKQY HAIMRRRQQR AKLEAQNKLI KARKPYLHES RHVHALKRPR GSGGRFLNTK 240 KLLQESEEAA AREQENDKSS QRDNKKANMS RFEAHMLHNS KDRSSTTSGS DITSVSDSAD 300 IFGHTEFQFS GFPTQTNRAM LVHGQSNDMH GGGDMHHFSV RI*
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Functional Description ? help
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Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY140028 | 0.0 | AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds. |
GenBank | BT008825 | 0.0 | BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds. |